PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g16040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 431aa    MW: 48039.7 Da    PI: 9.927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g16040genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-066991123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C++C+k F+r  nL+ H r H
  Tp5g16040 69 FICEICNKGFKRDQNLQLHRRGH 91
               89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-66891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.83E-86891No hitNo description
PfamPF121711.6E-56991IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0116991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8666991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-4134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.83E-8141166No hitNo description
SMARTSM00355200146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MMMPDDHHHL SFPSYVLHQE QHITSNPNPN PNPTSSNSNK RKRNLPGNPD PDAEVIALSP  60
NSLMATNRFI CEICNKGFKR DQNLQLHRRG HNLPWKLKQR TKNEQVKKKV YICPEKTCVH  120
HDPARALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVMSD WKAHSKICGT REYRCDCGTL  180
FSRKDSFITH RAFCDALAEE SARFVSVPPA AAAYLNNSPE AEAKLGNINP NLSSTSSQLD  240
QPGFNINSNN INGFMGQSFT NQLPLPANVF ASSSSPSPRS ASDSFQNLWH LQGQSSHQWL  300
LNGNNNNNNI LQRGINNIQE DHDTKKGISN GSLLSSGART DYYQNGGQVI ASMSATALLQ  360
KAAQMGSKRS SPSSNNATAF GLMTSSIFNN KQTENNINTK EVDERGFTRD FLGVGSQNRP  420
WPLLMVNHNH V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528220.0AK352822.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150182.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLM4EYE80.0M4EYE8_BRARP; Uncharacterized protein
STRINGBra033840.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein